Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015792055.1_cds_XP_016510245.1_2232
CDS Infomation

[gene=LOC107827584] [db_xref=GeneID:107827584] [protein=U-box domain-containing protein 33-like isoform X2] [protein_id=XP_016510245.1] [location=complement(join(64377..64559,65337..66122,66931..67461,67715..67876,68033..68438,68693..68797,69842..69963,70344..70465,71629..71890))] [gbkey=CDS]
Sequence

ATGGCATTGGAGAGTCCAGTACCCGAAATCCGACAGAGTCCGGTAAGGTACCCGGAAGTT
GATTTGTCGGGTCTGAATTTGAATGAGGAAATTGAAAGTCCATTAACGCCGCCGGCGAGA
GTGGCCGACGATATGATATATGTCGCCGTCGGGAAAGACTTGAAGGAGAGCGAACCTACT
CTGAAGTGGGCTTTGCACAAATCCGGTGGAAGGAGAATTTGCATTCTTCATGTTCATACT
CCAGCTCAGAAGATACCCATGATGGGTACAAAGTTTAACATAGATCAGTTGGATGTGCAT
CAAGTCAGAGCATACCATGAGAAGGAAAGGCAAGACATGCACAAGATTTTGGAAAAATAC
ATTCTGATCTGTGGACGAGCTGGGGTTCGAGCTGATAAACTAGTTGTTGAAATGGATTCA
ATTGAGACGGGCATAGTCGAGCTTGTATCGCAGCGTGGTATAGGGAAGCTTGTTATGGGA
GCTGCCGCAAACAAGTGCTATTCAAAGAAAATGACTGACCTTAGGTCGAAGAAAGCCATC
TATGTGCGGTTACAAGCACCCACATTCTGTTGCATCTGGTTTGTATGCAAAGGGAACCTC
ATTTATACAAGAGAAAGTGAGTCAGAGAGACCTAATACGGACAGTGTGTCACCGCCAATT
CCAGTAAGTCCCGAAAATGATACTGTTCTAAGATCAAGATCTGTTACAGAGGGTTACAAC
GAACAAGTAGGGCTCAGGGGCCCTTTCAACGAATATCGGAGAGTTGCTTCTGACAATCAC
AGGATAATCTTCTCTGGACCTCCCTCTGGTGGGACTTTACGGGCTAATTTTCCAAGCATG
AGTTCAGATAGAAGTCCCTCAGTGGCTTCACGGTTTTCATCAAGTTCATATGGTGAAATG
GTTGGTGATTCACCAACAATTTCCCTTGCAAGAACTGAAGGGAATGAGACTGCAATTGAC
TCATCCACACTGCACCACTTCATTCTTGGTCATCATCAGCCATCTTCTCCAAGTATAGCA
GAGAGTTTAAATGATGAGCCAGCTGGAAGCATGAATGATGAACTATTGGATAGACTTGAT
CAGTATGTCGCGGAGGCAGAAGATGCAAGGCGAGAAGCTTTTGAAGAATCAATCAAGCGT
AGGAAAGCAGAGAAGGATGCAATCGAGGCTAGACGAAGGGCAAAAGCATCAGAAACAATC
TATGCCGATGAGTTGAGGCAGAGAAGAGACATAGAGGAAGCACTTGCAAAAAGCAAGGAA
GAAGCTAATCAAATGAAATCAAAGCTAAATAAAATGTTGGCAGATCTGCAGGCAGCTCAA
GCACAGACATCTTCGCTGGAGCGCCAACTCTTAAATTCTGACACAACGGTGCAAGAGTTG
GAACAGAAAATGTTTTCTGCTGTCGACCTTTTGCAGAAGTACAGGAAGGAGAGAGATGAA
CTGCAGGTGGAGCGTGACGATGCACTCAATATAGCTGAGGCGCTGAGGGAACAGCACTCA
AACGGGTCCTCGACTACATCTGCATCTGTATTATTTGCTGAATTTTATTTTCATGAAATC
GAAGAAGCAACTCGGCGTTTTGACCCAGCCTTGAAAATTGGAGAAGGCGGTTATGGAAGC
ATTTACCGAGGCCTCCTTCGCCACACTCATGTAGCAATAAAGATGCTGCACCCTCATAGC
TCGCAAGGGCCCTCAGAGTTCCAACAGGAGGTCAATATTTTAAGCAAGTTGAGGCATCCA
AATATTGTCACACTTATANATCCAAATATTGTCACTCTTATTGGAGCGTGTCCAGAAGCA
TGGGCTCTTGTATACGAGTATCTTCCCAACGGAAGCCTGGAAGATCGTCTTACCTGCAAG
GATAACACGCCTCCACTGTCGTGGCAAACTAGAATTCGTGTTGCATCAGAGCTTTGCTCT
GCTCTCATCTTCCTCCATTCCTGCACCGCTCGGGGCATAATTCATGGTGATCTAAAACCA
GCAAATATCTTGCTTGATGCAAACTTTGTGAGCAAGCTTAGTGACTTTGGAATTTGTCGA
GTTCTCCCAGAAGACGAATTTTCGGAAAAAAGTACTTCACTTTGTTACAGAACTGACCCA
AAAGGGACATTTGCATATTTGGACCCTGAATTCCTCGATACAGGAGAGCTTACTCCAAAG
TCTGATGTTTATTCATTTGGGATTATATTACTTAGGCTGTTGACTGGGAGGCCTGCATTG
GGAATAAACAATGAAGTCCAATATGCATTAGATAAAGGAAATTTGAAAGATCTGCTGGAT
CCAACTGCTGGAGACTGGCCGTTTGTGCAAGCCAAGCAGTTGGCTCACTTAGCTATGAAT
TGTTGTGAGAAGAACAGGAGGCTTCGCCCTGAACTTTCTTCAGAGGTGTGGAAGGTGCTT
GAACCAATGAGAGCTTCATGTGGAGCATCATCTTTTAGGATGAGTTCTGAAGAGCGTTGT
GAAATTCCATCCTATTTTATTTGTCCAATATTTCAGGAAACTATGCAAGATCCAGTAGTA
GCAGCGGATGGCTTCACATACGAAGCAGAAGCGTTAAGAGGATGGTTGGACAGTGGACAT
GACACCTCGCCCATGACAAACCTTGCACTGTCGAATACGAATCTTGTTCCCAACCATGCT
CTCCGTTCTGCAATTCAGGAGTGGCTGCAACAGCATTGA

Peptide Sequence

PEP ID

XP_016510245.1
PEP Infomation

PREDICTED: U-box domain-containing protein 33-like isoform X2 [Nicotiana tabacum]
Sequence

MALESPVPEIRQSPVRYPEVDLSGLNLNEEIESPLTPPARVADDMIYVAVGKDLKESEPT
LKWALHKSGGRRICILHVHTPAQKIPMMGTKFNIDQLDVHQVRAYHEKERQDMHKILEKY
ILICGRAGVRADKLVVEMDSIETGIVELVSQRGIGKLVMGAAANKCYSKKMTDLRSKKAI
YVRLQAPTFCCIWFVCKGNLIYTRESESERPNTDSVSPPIPVSPENDTVLRSRSVTEGYN
EQVGLRGPFNEYRRVASDNHRIIFSGPPSGGTLRANFPSMSSDRSPSVASRFSSSSYGEM
VGDSPTISLARTEGNETAIDSSTLHHFILGHHQPSSPSIAESLNDEPAGSMNDELLDRLD
QYVAEAEDARREAFEESIKRRKAEKDAIEARRRAKASETIYADELRQRRDIEEALAKSKE
EANQMKSKLNKMLADLQAAQAQTSSLERQLLNSDTTVQELEQKMFSAVDLLQKYRKERDE
LQVERDDALNIAEALREQHSNGSSTTSASVLFAEFYFHEIEEATRRFDPALKIGEGGYGS
IYRGLLRHTHVAIKMLHPHSSQGPSEFQQEVNILSKLRHPNIVTLIXPNIVTLIGACPEA
WALVYEYLPNGSLEDRLTCKDNTPPLSWQTRIRVASELCSALIFLHSCTARGIIHGDLKP
ANILLDANFVSKLSDFGICRVLPEDEFSEKSTSLCYRTDPKGTFAYLDPEFLDTGELTPK
SDVYSFGIILLRLLTGRPALGINNEVQYALDKGNLKDLLDPTAGDWPFVQAKQLAHLAMN
CCEKNRRLRPELSSEVWKVLEPMRASCGASSFRMSSEERCEIPSYFICPIFQETMQDPVV
AADGFTYEAEALRGWLDSGHDTSPMTNLALSNTNLVPNHALRSAIQEWLQQH

Transcript Sequence

Gene sequence data has not been registered.